Smoldyn Publisher's description
from Steve Andrews
Smoldyn is a computer program for cell-scale biochemical simulations.
Smoldyn is a computer program for cell-scale biochemical simulations. It simulates each molecule of interest individually to capture natural stochasticity and for nanometer-scale spatial resolution. It treats other molecules implicity, enabling it can simulate hundreds of thousands of molecules over several minutes of real time. Simulated molecules diffuse, react, are confined by surfaces, and bind to membranes much as they would in a real biological system.
Smoldyn is easy to use and relatively easy to install. It is more accurate and faster than other particle-based simulators. Smoldyn's unique features include: a "virtual experimenter" who can manipulate or measure the simulated system, support for spatial compartments, molecules with excluded volume, and simulations in 1, 2, or 3 dimensions.
What's New in This Release:В· Pre-compiled software downloads
В· Libsmoldyn is a new Smoldyn API
В· All memory allocation is dynamic
В· Real-time display for time and molecule counts
В· Dynamic system updating for mid-simulation changes
System Requirements:В· freeglut
Program Release Status: New Release
Program Install Support: Install and Uninstall