SeqGene Publisher's description
from Xutao Deng
SeqGene is an open-source software for mining next-gen sequencing datasets
SeqGene is an open-source software for mining next-gen sequencing datasets, focusing on post-alignment quality control, SNP and indel identification and annotation, RNA expression quantification, allele specific expression, and expression-genotying association analysis. SeqGene is especially suited for RNA-seq and exonome-seq applications, with focus on protein coding and regulatory regions of a genome. For RNA-seq applications, SeqGene implemented a novel topology-based pathway analysis method to identify SNP-Expression co-enrichment and SNP-Expression paths.
System Requirements:No special requirements.
Program Release Status: New Release
Program Install Support: Install and Uninstall