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  • License: Freeware
  • Last update: 5 years ago
  • Total downloads: 26
  • Price: Free |
  • Operating system: Win All
  • Publisher: Micah J. Manary
See full specifications

windows default iconPlaTypUS for Windows Publisher's description

The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool

The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.


Sequence alignment
SNV analysis
CNV analysis
Inter-sample comparison

What's New in This Release:

В· More error checking, and big change from custom SNV annotation to snpEff java program, integrated in to the display

System Requirements:

В· Matlab
В· Processor: 4 cores recommended
В· Memory: At least 4GB RAM
В· Required disk space: Variable, but >50GB on the called hard disk is a good minimum
Program Release Status: New Release
Program Install Support: Install and Uninstall

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