msInspect Publisher's description
msInspect allows you to process and view mass spectrometry (MS1) data in an mzXML file.
msInspect allows you to process and view mass spectrometry (MS1) data in an mzXML file. You can use msInspect's built-in tools to inspect data, identify peptide features, generate peptide arrays using data from multiple runs, and export data to external applications for further analysis and collaboration. msInspect is an open source application written in Java.
msInspect is also a platform for rapid development of proteomics applications. Three applications written using the msInspect platform have been the subject of publications:
msInspect/AMT is an Accurate Mass and Time workflow for combining LC-MS and LC-MS/MS peptide data.
MRMer is a tool for evaluating MRM ion candidates and measuring product-ion quantities. Developed in partnership with Dr. Dan Martin, ISB.
Qurate is a tool for visually evaluating quantitation results from isotopically labeled MS/MS experiments.
What's New in This Release:В· This version includes a major revision to peptide array creation. Previously, prior to clustering of peptide features across runs, all features were deconvoluted, i.e., combined with features representing the same peptide from all charge states. Now, although alignment and parameter optimization are still done once for the entire array, clustering is done separately for features of different charges. The earlier behavior can be reproduced using the '--deconvolute' flag. The peptide array output format now includes a 'charge' column.
System Requirements:В· Java
Program Release Status: New Release
Program Install Support: Install and Uninstall