Jmol
Publisher's description:
An applet and Java based application designed to display various 3D chemical information.
Jmol is an applet and Java based application designed to display various 3D chemical information.
Jmol's features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs
Here are some key features of "Jmol":
· High-performance 3D rendering with no hardware requirements
File formats (see also file formats section within Jmol Wiki):
· CIF/mmCIF - Crystallographic Information File and Macromolecular Crystallographic Information File, the standards from the International Union of Crystallography
· CML - Chemical Markup Language
· CSF - Fujitsu CAChe chemical structure, now Fujitsu Sygress
· CTFile - Elsevier MDL chemical table
· GAMESS - General Atomic and Molecular Electronic Structure System output, Gordon Research Group, Iowa State University
· Gaussian 94/98/03 output - Gaussian, Inc.
· Ghemical
· HIN - HyperChem from Hypercube, Inc.
· Jaguar - Schrodinger, LLC
· MM1GP - Ghemical molecular mechanics
· MOL - Elsevier MDL structure
· MOLPRO - Molpro output
· MOPAC - MOPAC 93/97/2002 output (public domain)
· - MOPAC 2007 (v.7.101) graphf output (.mgf files) (public domain)
· NWCHEM - NWChem output, Pacific Northwest National Laboratory
· odydata - Odyssey data, WaveFunction, Inc.
· PDB - Protein Data Bank, Research Collaboratory for Structural Bioinformatics
· QOUT - Q-Chem, Inc.
· SDF - Elsevier MDL structure
· SHELX - Structural Chemistry Department, University of Göttingen (Germany)
· SMOL - Spartan data, Wavefunction, Inc.
· spinput - Spartan data, Wavefunction, Inc.
· xodydata - Odyssey XML data, WaveFunction, Inc.
· XYZ - Minnesota Supercomputer Institute XMol file
· XYZ+vib - XYZ format files with added vibrational vector information
· XYZ-FAH - Folding@home XYZ file
· * Files which are compressed with gzip will automatically be decompressed
· Animations
· Vibrations
· Basic support for unit cell and symmetry operations
· Schematic shapes for secondary structures in biomolecules
· Measurements
· distance
· angle
· torsion angle
· Support for RasMol/Chime scripting language
· javascript support library
· Exports to .jpg, .png, .ppm, .pdf, and PovRay
You can
free download Jmol 11.7.39 now.
What's New in This Release:
· bug fix: biomolecules for new PDB format
new feature: consistent set of atom properties now accessible via:
· select {xxxx = whatever}
rather than the more cumbersome:
· select {*} (_x.xxxx = \"whatever\")
System Requirements:
- Java Runtime Environment
-
Download Jmol 11.7.39 free