About Site Map Submit Contact Us Log in | Create an account
Create an account Log In
Average Rating
User Rating:
Visitors Rating:
My rating:

Write review
  • License: Freeware
  • Last update: 6 years ago
  • Total downloads: 100
  • Price: Free |
  • Operating system: Win All
  • Publisher: M. Tillier
See full specifications

windows default iconDependency Publisher's description

4to20 translates DNA/RNA sequences to rRNA-coded sequences in 20-letter code

* 4to20 translates DNA/RNA sequences to rRNA-coded sequences in 20-letter code
o rRNA structure in .bpseq format (see Comparative RNA Web Site for details)
o rRNA alignment in fasta format
the first sequence should be that of the corresponding .bpseq structure file
o Coded rRNA alignment in both fasta and phylip formats.
* 20to4 translates rRNA-coded sequences to 4-letter code
o rRNA-coded sequences in fasta or phylip format
o dna sequences in phylip format
* rnadist performs Distance analysis using the OTRNA model and gamma-distributed rates.
o coded rRNA sequences file in fasta format
o Gamma parameters for single-stranded sites and for double-stranded sites (enter 0 for equal rates)
o Distance matrices (opper triangular) include:
+ Ks.txt for single stranded sites only - Kimura (1981) model
+ Kd.txt for double stranded sites only - OTRNA model
+ KsKd.txt for both - weighted average
* rRNAdist, rRNAml, rnaml: modified versions of protdist, protml, protmlk from PHYLIP to use the rRNA matrices.
* etseqgen: modification of PSeq-gen to use the PMB model or the Bacterial SSU rRNA model.
o tree file
o choose PMB or RNA for substitution model (default is PMB)
o protein sequences or coded rRNA sequences in fasta format

System Requirements:

No special requirements.
Program Release Status: New Release
Program Install Support: Install and Uninstall

Dependency Tags:

Click on a tag to find related softwares

Is Dependency your software?

Manage your software

Most Popular

windows default icon PhotoShine 4.51
Add your photo into different beautiful templates
windows default icon Xorax Contact Sheet 1.3
"Xorax Contact Sheet" is a simple tool that generates contact sheet (index file)
windows default icon MapInfo Professional 10.5
MapInfo Professional is a powerful Microsoft Windows–based mapping and geographic analysis application.
windows default icon Circuit Wizard Professional Edition 1.10
Circuit Wizard, our flagship product, is a revolutionary new system that combines circuit design, PCB design,... Read more
windows default icon Photo Makeup Editor 1.85
Photo Makeup Editor is a photo retouching and virtual makeup software.

Related Category

» Animation Tools (180)
» CAD (1449)
» Editors (1260)
» Font Tools (714)
» Icon Tools (153)
» Other (1297)
» Screen Capture (394)
» Viewers (426)