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windows default iconAssemble Publisher's description

Assemble proposes an intuitive graphical interface to study and construct complex three-dimensional RNA structures.

Assemble proposes an intuitive graphical interface to study and construct complex three-dimensional RNA structures. When an RNA tertiary structure is opened with Assemble, it is automatically annotated with a secondary structure definition. This secondary structure can be used as a map to analyze the original tertiary structure. Using a secondary structure definition, Assemble can also produce a first draft of a 3D Model. Then the construction process can be pursued "by hand" using several widgets.

The main features of Assemble are:

prediction of RNA secondary structures
interactive RNA secondary structure construction and visualization
semi-automatic generation of RNA 3D models
connection between the 2D and 3D panels
torsion angles alteration for any single residue
translation and rotation of any element from a few atoms to a whole molecule
easy cut, link of any molecular chains
ability to manage your own RNA structural library using the MyPDB panel
ability to search for and save RNA structural motifs to easily fold a 3D region
embedded refinement tool
mono and stereo views
all the computer-intensive tasks are delegated to RNA WebServices
entirely developed with the Java language. Runs on Windows, Linux and MacOSX
OpenGL-powered application thanks to the JOGL API project
open source (MIT) license and free

System Requirements:

В· Java 6
Program Release Status: New Release
Program Install Support: Install and Uninstall

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