Systems Biology Simulation Core Library Publisher's description
Accurate and efficient Java library that simulates biological models.
The Systems Biology Simulation Core Library provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project and can be used on every operating system for which a Java Virtual Machine is available. Please note that this project does not contain any user interface, neither a command-line interface, nor a graphical user interface. This project has been developed as a pure programming library. To support the MIASE effort, it understands SED-ML files. Its abstract type and interface hierarchy facilitates the implementation of further community standards, such as CellML.
What's New in This Release:New features:
· The violation of SBML constraints can now be treated using specialized listeners. In this way it has become much easier to customize what should happen in case of unsatisfied constraints during the simulation.
· The csymbol delay can now be interpreted with arbitrary expressions.
· Models with fast reactions are now simulated more precisely.
· Some inefficiencies in the simulation routine have been removed.
Program Release Status: New Release
Program Install Support: No Install support