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  • Last update: 5 years ago
  • Total downloads: 24
  • Operating system: Linux, Mac OS X, Win All, BSD, Solaris
  • Publisher: Will Dampier
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scripts default iconSeqLogoFig (Scripts) Publisher's description

Sequence Logos are a common technique for visualizing

Sequence Logos are a common technique for visualizing the conservation of positions within a multiple sequence alignment. The technique creates an image where the height of the letter represents its sequence conservation.

The Matlab bioinformatics toolbox has a function which performs this analysis and visualization. However, the figure it generates is a specialized java object and cannot be modified in any meaningful way.

This wrapper re-creates the image in a way that's more friendly for modifications of things like tick-labels, titles, letter colors, embedding in subplots or GUI's etc.

This function uses the image-processing toolbox to generate an "image" which has the letters transformed to the "proper" size.

This function was based off of suggestions from this StackOverflow post:

http://stackoverflow.com/questions/2526714/changing-the-x-axis-of-seqlogo-figures-in-matlab ://http://stackoverflow.com/questions/...ures-in-matlab

System Requirements:

MATLAB 7.9 (2009b)
Program Release Status: New Release
Program Install Support: Install and Uninstall

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