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  • License: Freeware
  • Last update: 6 years ago
  • Total downloads: 113
  • Price: Free |
  • Operating system: Linux, Mac OS X, Win All, BSD, Solaris
  • Publisher: Colin Clarke (2 other programs)
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scripts default icongethgvbase (Scripts) Publisher's description

GETHGVBASE returns polymorphism data from the human genome variation db

GETHGVBASE returns polymorphism data from the human genome variation db

HGVDATA = gethgvbase(SNPID) reads in a %hgvbase web record from
EMBL and creates a structure DATA %containing fields corresponding
to the hgvBase keywords.

FIELDNAME DESCRIPTIONS: a complete %description of field names can be
found at: http://hgvbase.cgb.ki.se/cgi-bin/main.pl?p...data_struct.htm

data = gethgvbase('SNP000003319')
hgvData = gethgvbase('SNP000003320')


HGVbase: a human sequence variation %database emphasizing data
quality and a broad spectrum of data %sources. Nucleic Acids Res. 2002 Jan

See also:

Colin Clarke, Cranfield University - %Analytical Science and Informatics
$revision 1.0$ $Date: 12/09/2006$
email: c.clarke.s03@cranfield.ac.uk

data = gethgvbase('SNP000003319')

data =

snpID: 'SNP000003319'
varType: 'SNP'
varStatus: 'Proven'
geneType: 'Functional Gene'
geneSymbol: 'COL4A4'
geneName: 'collagen, type IV, alpha 4'
geneRegion: 'I-Ex:CDS+'
alleles: [2x1 char]
sourceId: [2x12 char]
DBXREFS: [3x21 char]
citation: [2x41 char]
feature: [14x12 char]
motifChange: []
population: 'European, African and Middle East (90 individuals)'
mesh: [25x31 char]

System Requirements:

MATLAB 7.2 (R2006a)
Program Release Status: New Release
Program Install Support: Install and Uninstall

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