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  • License: Freeware
  • Last update: 5 years ago
  • Total downloads: 584
  • Price: Free |
  • Operating system: Mac OS X
  • Publisher: Arq5x
See full specifications

mac default iconBEDTools For Mac Publisher's description

bedtools: a flexible suite of utilities for comparing genomic features.

bedtools: a flexible suite of utilities for comparing genomic features.

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together. The following are examples of common questions that one can address with BEDTools.
1. Intersecting two BED files in search of overlapping features.
2. Culling/refining/computing coverage for BAM alignments based on genome features.
3. Merging overlapping features.
4. Screening for paired-end (PE) overlaps between PE sequences and existing genomic features.
5. Calculating the depth and breadth of sequence coverage across defined "windows" in a genome.
6. Screening for overlaps between "split" alignments and genomic features.

System Requirements:

No special requirements.
Program Release Status: Minor Update
Program Install Support: Install and Uninstall

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