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  • License: Freeware
  • Last update: 6 years ago
  • Total downloads: 84
  • Price: Free |
  • Operating system: Mac OS X
  • Publisher: Seqlib Team
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mac default iconSEQLIB For Mac Publisher's description

Seqlib is a Python module and application package for population genetics...

Seqlib is a Python module and application package for population genetics (and more). It allows processing, analyzing and simulating biological sequences. It is specifically designed for automated large-scale sequence analysis.

Main features:

* Fasta-centered input and output, format conversion utilities.
* Molecular population genetics statistics (neutrality tests, population divergence).
* Integrated coalescent simulator implementing partial selfing, custom population structure and history, microsatellite models and others.
* Interface to the commonly used sequence simulator ms.
* Interface to external applications allowing similarity search (BLAST), molecular phylogeny, primer design and others.
* Approximate Bayesian Computation based fit of demographic models.
* C++ core library improving performance.
* Python front-end designed for use in simple Python programs or scripts.
* Applications available for direct execution from the terminal.
* Documentation for users and developers.

Seqlib is released under the GNU General Public License (GPL) version 3 (compatible with any later version). The license and the high-level, object-oriented design of the seqlib interface allows anyone to modify it to match specific needs.

What's New in This Release:

В· Few minor improvements;
В· The command abc_psimuls accepts an option "excludefixed" that allows discarding simulations with S=0 for computing the P-values of D, H and Z statistics;
В· The rule G is changed.

System Requirements:

No special requirements.
Program Release Status: New Release
Program Install Support: Install and Uninstall

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