UGENE Publisher's description
Integrated Bioinformatics Tools
UGENE is a free cross-platform genome analysis suite.
It works perfectly on Linux, Windows or Mac OS and requires only a few clicks to install.
Here are some key features of "UGENE":
В· Multiple sequence alignment using MUSCLE 3 and MUSCLE 4;
В· HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
В· PCR Primers design using Primer 3;
В· Protein secondary structure prediction using GOR IV and PSIPRED;
В· Search for restriction enzymes and integration with REBASE;
В· Extremely fast repeat finder;
В· Search for transcription factor binding sites using SITECON;
В· ORF finder;
В· Complete Smith-Waterman algorithm implementation.
В· Visual and interactive genome browsing;
В· Chromatograms visualization;
В· 3D viewer for files in PDB and MMDB formats;
В· Multiple sequence alignment editor;
В· Easy to use workflow designer for custom computational workflows.
В· High performance computing in UGENE
В· Complete support of modern multicore processors and SSE instructions;
В· Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
В· Integrated solutions for Cell Broadband Engine;
В· Private solutions for supercomputers and distributed computing.
В· Can be used for education in schools and universities;
В· Features to be included into the next release are initiated by users;
В· UGENE team is ready for collaboration in related projects, both free or commercial.
What's New in This Release:New plugins:
В· Phylip plugin for building phylogenetic trees. Based on original Phylip 3.6 package .
В· Neighbor Joining algorithm;
В· Phylogenetic trees visualization;
В· Integration with Multiple Alignment Editor.
В· Distributed computing in UGENE
В· Support for launching HMMER 3 , Smith-Waterman , MUSCLE tasks on remote machines.
В· Remote tasks support;
New features and bug fixes:
В· Search for tandem repeats introduced in Repeat Finder plugin;
В· Project files transferability support;
В· "Export project" feature;
В· Interaction with remote databases: NCBI, PDB, Swiss Prot;
В· BioStruct3D plugin: anaglyph stereo mode;
В· and a lot more...
System Requirements:В· Qt
Program Release Status:
Program Install Support: Install and Uninstall