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  • License: Freeware
  • Last update: 6 years ago
  • Total downloads: 101
  • Price: Free |
  • Operating system: Linux
  • Publisher: Jeet Sukumaran and Mark T. Holder
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linux default iconDendroPy Publisher's description

A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.

DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing some useful phylogenetic operations, such as data conversion and tree posterior distribution summarization, are also distributed and installed as part of the libary. DendroPy can thus function as a stand-alone library for phylogenetics, a component of more complex multi-library phyloinformatic pipelines, or as a scripting "glue" that assembles and drives such pipelines.


What's New in This Release:

New Features:

Taxon objects can now be accessed from a TaxonSet directly by their label:

В· >>> taxonset = TaxonSet(['a', 'b', 'c'])
В· >>> assert taxonset[0] is taxonset['a'] # True

Bug Fixes:

В· Fixed taxon-pruning clean-up resulting in all leaves being removed (!).
В· Fixed improper value returned for latest commit date when running under Windows.

System Requirements:

No special requirements.
Program Release Status:
Program Install Support: Install and Uninstall

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